Commit b3bceea1 authored by jode5573's avatar jode5573

added better notes

parent 35a1675e
Pipeline #207 passed with stage
in 2 minutes and 29 seconds
#!/bin/bash
# Here we define version strings we WANT to see/expect
readonly FASTQC_VERS="FastQC v0.11.8"
readonly TRIM_VERS="0.38"
cd singularity
# Test building our container, needed for running utilities
sudo singularity build test.img Singularity
fastqc=$(singularity exec test.img fastqc --version)
trim=$(singularity exec test.img trimmomatic -version)
# Need to add conditionals here for if they *don't* match :-)
if [[ $FASTQC_VERS == $fastqc ]]
then
echo "FastQC version string: ${fastqc}"
# Here is where we run fastqc on an input, test output
fi
if [[ $TRIM_VERS == $trim ]]
then
echo "Trimmomatic version string: ${trim}"
echo "Trimmomatic version string: ${trim}"
# Here is where we run trimmomatic on an input, test output
fi
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