Differential ATAC-Seq toolkit

This toolbox re-implements the OME Bio-Formats MATLAB Toolbox as a class in MATLAB.

Transcription fit (Tfit) utilizes a generative model of RNA polymerase II to identify sites of divergent transcription in nascent transcription assays like GRO-seq, PRO-seq, GRO-cap and others.

Used to demonstrate developing a very basic workflow with continuous analysis for ABRF Genome Webinar - December 2018

A Python package for visualizing and exploring MD score computations

Tools to verify several popular bioinformatics formats quickly and efficiently.

contains code for the frontend web presence of the hackathon education platform

A MATLAB simulation for freely diffusing particles within a nucleus

A go-based utility for stitching many steps with potentially different memory and core requirements together. Outputs a bunch of sbatch scripts and one script to wrap and run them from a login node.

Algorithms required to compute Motif Displacement Scores

Used to house sbatch scripts and other example code for Fiji