Differential ATAC-Seq toolkit

This toolbox re-implements the OME Bio-Formats MATLAB Toolbox as a class in MATLAB.

A Python package for visualizing and exploring MD score computations

Transcription fit (Tfit) utilizes a generative model of RNA polymerase II to identify sites of divergent transcription in nascent transcription assays like GRO-seq, PRO-seq, GRO-cap and others.

Algorithms required to compute Motif Displacement Scores

A MATLAB simulation for freely diffusing particles within a nucleus

contains code for the frontend web presence of the hackathon education platform

A go-based utility for stitching many steps with potentially different memory and core requirements together. Outputs a bunch of sbatch scripts and one script to wrap and run them from a login node.

Used to demonstrate developing a very basic workflow with continuous analysis for ABRF Genome Webinar - December 2018

Tools to verify several popular bioinformatics formats quickly and efficiently.