- 26 Jan, 2018 1 commit
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Jian Wei Tay authored
If ``getTimestamps`` was used with a frame range not starting from 1, it would return a vector with 0's. For example: ``` getTimestamps(1,1, 3:5) = [0 0 3 4 5] ``` This commit fixes the indexing issue that causes this.
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- 25 Jan, 2018 1 commit
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Jian Wei Tay authored
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- 08 Dec, 2017 1 commit
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Jian Wei Tay authored
The last commit addressed an issue when a file was missing timestamp information. The code will now output a warning + a timestamp vector of zeros. However, the timestamp units were not being assigned in this case. In this commit, tsunits are now assigned to a blank string ''. This should avoid issues with code compatibility when the timestamp information is missing.
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- 04 Dec, 2017 1 commit
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Jian Wei Tay authored
When timestamps were not saved in the file metadata, getTimestamps would return a "reference to non-struct array" error. I added some statements which would check that the call to getPlaneDeltaT is not empty. If it is, the code will return a warning along with a timestamp vector which is all zeros.
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- 03 Nov, 2017 1 commit
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Jian Wei Tay authored
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- 01 Nov, 2017 1 commit
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Jian Wei Tay authored
Issue: bfReader.getTimestamps(1, 'channel') was giving a java out of index error. Cause: The metadata.getPlaneDeltaT function requires both series index and image index to be 0 based. Solution: Subtracted the image plane index (``bfIndex``) by 1 in getTimestamps().
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- 30 Oct, 2017 1 commit
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Jian Wei Tay authored
The TimeRange input validation was initially isinf(x) || isnumeric(x). However, entering a range (e.g. 1:10), the validation function returns an error because isinf(x) is a vector but || is a scalar operation. Corrected this by changing to all(isinf(x)) ...
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- 22 Sep, 2017 1 commit
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Jian Wei Tay authored
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- 24 Aug, 2017 4 commits
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Jian Wei Tay authored
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Jian Wei Tay authored
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Jian Wei Tay authored
Merge branch 'dev'
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Jian Wei Tay authored
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- 21 Jul, 2017 2 commits
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Jian Wei Tay authored
* Added cleanup function to call close() on bfObj
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Jian Wei Tay authored
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- 14 Jul, 2017 1 commit
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Jian Wei Tay authored
* Removed stacking functions (MAP, zStack etc.) * Unified the interface i.e. getPlane adn getTimestamp now uses (Z,C,T) coordinates. getXYPlane uses (C, T, SiteIndex) [Z coordinate is unsupported for this function because I do not have an example to test on]. * Added an example ND2 so that users can verify their installation. The example.nd2 is from Joe 4x4 binned image IQBio 2016
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- 26 May, 2017 1 commit
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Jian Wei Tay authored
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- 25 May, 2017 3 commits
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Jian Wei Tay authored
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Jian Wei Tay authored
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Jian Wei Tay authored
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- 24 May, 2017 3 commits
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Jian Wei Tay authored
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Jian Wei Tay authored
Updated getXYloc to fix iSeries (was zero based, but now it should be 1-based. Also updated the getPlane function call to match the signature of the planeSpec.
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Jian Wei Tay authored
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- 17 May, 2017 1 commit
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Jian Wei Tay authored
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- 12 May, 2017 2 commits
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Jian Wei Tay authored
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Jian Wei Tay authored
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- 10 May, 2017 2 commits
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Jian Wei Tay authored
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Jian Wei Tay authored
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- 03 May, 2017 1 commit
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Jian Wei Tay authored
* Made a change to the way the plane specification was working in getPlane. Previously, when using getTile, the planeSpec would be binned into a single vector - this then causes the inputParser to fail because the value is no longer scalar. Now the planeSpec is coverted first into a cell, then put into inputParser which handles it correctly. * Also updated the testBioformatsImage to check that getTile is correct.
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- 27 Apr, 2017 2 commits
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Jian Wei Tay authored
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Jian Wei Tay authored
Fixed bug with getTile. The tile height was using image width and therefore was not being calculated correctly.
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- 19 Apr, 2017 1 commit
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Jian Wei Tay authored
Moved unit string parser to static methods. Updated PxUnitStr and timestamps (timestamps now has a second output with the unit str)
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- 18 Apr, 2017 1 commit
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Jian Wei Tay authored
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- 15 Apr, 2017 1 commit
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Jian Wei Tay authored
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- 14 Apr, 2017 1 commit
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Jian Wei Tay authored
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- 07 Apr, 2017 1 commit
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Jian Wei Tay authored
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